rs50653705 SNP Detail

Summary

• ID
  rs50653705
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:109746844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGCGGAGG CTTCTGAAAT
  ACTAACTAGA CCAGGAGTGA GATGATCTTG GGCAGAGGGC AGAAGAACAT GGTATCCAAG
  AGATTCTGAG GCCTTGTCTA TAAAGTCTGA GCGCCACTGG TCTTTCTTTT TAAAGTTCTC
  TTTCAACCTT ATAGTGAGGA AATTCATCTT TCTTAAAACT TGTCTGTATT TATTTATCCA
  T
  TAGCATAACT TTAGAGTATA TGGATTCAAC CTGACTTTAT TATTATTTAG CATATTCTTT
  AATGTAGAGA TGGTAGATTT TTTTTTTTTT ATTTAGGAAA TCGGCTAGCT TTTCGTTAAT
  TTATTTACAT TTTCTTTTTT TTTTATTTGC ATGAGGTGGC TAGTTAACTT TATACAGTAT
  AGATATTTTA ATGCTCTTCT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147206134	ENSMUSSNP287832	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50653705					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109746844 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12039	CpG island 12039	969 bp proximal
Lgr4	leucine-rich repeat-containing G protein-coupled receptor 4	1148 bp upstream
Rr397176	regulatory region 397176	859 bp upstream
Rr562509	regulatory region 562509	658 bp proximal
Rr562510	regulatory region 562510	1159 bp proximal
Rr562511	regulatory region 562511	1264 bp proximal
Rr562512	regulatory region 562512	1303 bp proximal
Rr562513	regulatory region 562513	1691 bp proximal
Tssr19307	transcription start site region 19307	1072 bp upstream
Tssr19308	transcription start site region 19308	1097 bp upstream
Tssr19309	transcription start site region 19309	1140 bp upstream
Tssr19310	transcription start site region 19310	1180 bp upstream
Tssr19311	transcription start site region 19311	1224 bp upstream