rs50654038 SNP Detail

Summary

• ID
  rs50654038
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:68257528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCCCTGGG TCTCCAATGT
  TGGGAATACT ATTACATATA ACCAGGCCTG GCTTTTTCAT GTGGATCAGA GGACTGAGTC
  CACTCTGGTT TTTCACTGTT GTGTAGCAAT CACTTTAGTA ACAGGGTCTT TTCTCTGGAC
  TGATTTAAAA TATGTACTCA AATTTCCCAT TGAACCTCAT AAACCCTCCG ACATATATGA
  Y
  AATTTTTATG CCCATTTAAA GGAAAAGAGG CTGATTTTGT TATGTGTCTA TGTGTCTAAT
  CTCTTAAACA TAAAGATTGA TTACATCTAA TATGAATTGA CAGTGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGGAGAAAT TCTAAATTTT AGGATTATTG
  TACAAAATGT TTGTTTCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146487430	ENSMUSSNP416169	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50654038					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:68257528 () rs orientation: forward

Symbol	Name	Function Class
Rr376643	regulatory region 376643	1779 bp upstream