rs50654682 SNP Detail

Summary

• ID
  rs50654682
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72533479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATGCTCCAG CCTCATAGAT ACAGTGGTCT CATACCTGTA
  CATAACTGGT GTGCTTCCTC CTGTGCAGTT TCAGGCATGT CCAACCTGTG GCCCTTGGCC
  R
  TAGGTAGCCC AGCGTATATT TTATATAAAT GTGACTCAAC AGAAAGCTTT AAACTCTTAA
  AAAACATGTT AAGGTTTTCT TTAATTTTTT TATTTATTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss133285553	ENSMUSSNP6052573	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50654682					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72533479 () rs orientation: forward

Symbol	Name	Function Class
Capg	capping actin protein, gelsolin like	within coordinates
Tssr57142	transcription start site region 57142	693 bp downstream
Tssr57143	transcription start site region 57143	667 bp downstream
Tssr57144	transcription start site region 57144	378 bp downstream
Tssr57145	transcription start site region 57145	338 bp downstream
Tssr57146	transcription start site region 57146	319 bp downstream
Tssr57147	transcription start site region 57147	838 bp upstream
Tssr61469	transcription start site region 61469	1293 bp downstream