rs50654708 SNP Detail

Summary

• ID
  rs50654708
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50409348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCTTCTT TTTAGTCCTA
  ACAGGAGCTT TTACTATGAG GGATAATGTT ATTTCCCAGA CACAGAGCTA TGGTGAGCAC
  CAAGAGGAAA CTTAAAAAAA TAAAAGTGTA GCAGTCAGAG ATGTGGCTTA GTTAGTAGAA
  CGCTTGCCTG ACACATACCT CGTTCTGGGT TCACTGTTCT ACATTTTATA AAGCAGGTGT
  R
  GCAGCATACA CCTGCAGTGT CTATACACAA GAAGGAGAGT CGGGAGTTCA AGGACAGCCT
  CGGTTACGTT TGAATCCAGC TTAGGATGAG ATCCTGTTTC GAAATACACA AATTGTGTAC
  AGTAGCCACT GAGCAAGAAG AAGCCAGAGC GAAGAAGTGA CCAGTCTTGC CCCTAAGTAC
  CAGAGCTGGG ATGCAGATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136476487	ENSMUSSNP348825	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50654708					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50409348 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21724	CpG island 21724	850 bp proximal
Plet1	placenta expressed transcript 1	within coordinates
Plet1os	placenta expressed transcript 1, opposite strand	within coordinates
Tssr85026	transcription start site region 85026	1247 bp downstream
Tssr85027	transcription start site region 85027	1096 bp upstream
Tssr85028	transcription start site region 85028	1126 bp upstream
Tssr85029	transcription start site region 85029	1161 bp upstream
Tssr85030	transcription start site region 85030	1206 bp upstream