rs50655237 SNP Detail

Summary

• ID
  rs50655237
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119980028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCTTTTTG GAATACACTT TTTGTTTTTA ATTAGCACAC
  ACAGATGCAC AAATTATTTG ACAGGCACTA ATTACAGAAT TATGGGGATG AAAATTATAG
  R
  CTGCTTCATA TTGGAAGAAT GTTTTTATTG GTTTGTTTTT ATTTTTCAAT TCTTGTGATT
  AAACCTAAGA CCCTGGGCAT ACTAGGCAAG CACTTTACT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147352624	ENSMUSSNP3854449	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320478824	CHEV_2_119975283	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50655237					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119980028 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ehd4	EH-domain containing 4			Intron
				Noncoding-Transcript-Variant
Rr563646	regulatory region 563646			1028 bp distal
Rr563647	regulatory region 563647			1523 bp proximal