rs50656752 SNP Detail

Summary

• ID
  rs50656752
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134945171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTCTTC CTTTTTTAGT
  TTGGGCTGCT TTTCAATAGA ACTTCATCTG CCTCCACCTC CCAAATGCAT GCCAGCTTCT
  TCTTTTTTAA AAAGATTTAT TTTATGTATG AGTACACTGT ATCTGTCTTC AGACACACCA
  GAAGAGGGCA TCAGATCCCA ATACAGATGG TTGTGAGCCA CCATGTGGTT GCTGGGAATT
  R
  AACTCAAGAC CTCTGGAAGA GCAGTCAGTG CTCTTAACCA CTGAGCCATC TCTCCACCCC
  AACACACCAG CTTCTAAAAC CATCTTTTCT TGTCTCAGAT CTTTACATGC AACAAATGCC
  CATTAGTATT GCATTAAGCT TGGTTTGTCA CAGAATTAAC ATTGTGGCCT TGAAAGGTCA
  CCACACAGAA TTAGACAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147541485	ENSMUSSNP3942468	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss321351213	CHEV_4_134773775	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50656752					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134945171 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Rr86243	regulatory region 86243	within coordinates
Rr86244	regulatory region 86244	1630 bp proximal
Tssr43955	transcription start site region 43955	1464 bp upstream
Tssr43956	transcription start site region 43956	1433 bp upstream
Tssr43957	transcription start site region 43957	1183 bp upstream
Tssr43958	transcription start site region 43958	1047 bp upstream
Tssr43959	transcription start site region 43959	1026 bp upstream
Tssr43960	transcription start site region 43960	874 bp upstream
Tssr43961	transcription start site region 43961	815 bp upstream
Tssr43962	transcription start site region 43962	769 bp upstream
Tssr43963	transcription start site region 43963	710 bp upstream
Tssr43964	transcription start site region 43964	598 bp upstream
Tssr43965	transcription start site region 43965	752 bp downstream