rs50657052 SNP Detail

Summary

• ID
  rs50657052
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24568736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGAGAG AAAGAGAGAG
  AAGAGAGAGA TGCAAATGTC ACGTGTCCAA TTTACATCTA TAGATAAATC TATATATTTA
  CATAAACAGG TACAAAATTA TAGAGAGAGT ATTTACTGAA CAAATGGCAT GGGAAGAGGA
  TGGCAGTTAT AAAAAAAGTG GCCTTTTGTT TTAAAATTTG AAGAATATAT TTATATAATA
  T
  TTGCTAAATT TTAAATTTGT GAATATACTA ATCATCTATA TGAAACACCT CTAAAACTTC
  TAGATGATTA AAAGCTATGC AAACTACACT TGAAGCAAGA TAGAGATTCA CACAAAGACC
  ACTATGGCAG TGTTGCTACA GTTTCTGTGC TGCCTGGATA TTTAATAGAA CAAGCCTACA
  TAACTCACTG TCATAGTCAA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145351306	ENSMUSSNP2235350	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50657052					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24568736 () rs orientation: forward

Symbol	Name	Function Class
Abca17	ATP-binding cassette, sub-family A member 17	within coordinates
Cpgi8716	CpG island 8716	1061 bp proximal
D17Jcs14	DNA segment, Chr 17, John C. Schimenti 14	827 bp distal
Rr405082	regulatory region 405082	1956 bp upstream
Rr523280	regulatory region 523280	1107 bp proximal
Rr523281	regulatory region 523281	1257 bp proximal
Rr523282	regulatory region 523282	1457 bp proximal
Tssr146725	transcription start site region 146725	1291 bp downstream
Tssr146726	transcription start site region 146726	1310 bp downstream