rs50657395 SNP Detail

Summary

• ID
  rs50657395
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:100894469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAACGCT GGAAGCGTTA
  GCAGTTGGTG CACCGGCTTC AGCTCTATGT ATACGGATGC AATGAATGAG GTCCGAAGCC
  ACATACACAA GTTCTTACAG CGAAAGCTGC CAGCAACCTA AGCCCCTAGT CTAGGTTGCC
  TTTAGTTTGT GTACAGATAG ACTGCAAGTT TCCTAATGAA ATCTATGCTG TAAGATTCTC
  Y
  TCTGAGGAGC TGATTCAGAC AGATACAGAC ACCCACAGCC AAACAGTGCA TAGAGTCTCG
  GGATTCTTAT GGAAGAATAG GACCCCAAAG GGGATAGGAA TTCCACAGGA AGACCAACAG
  AGTCAACTAA CCTGGATCCC TGGGGCTCTC AGAGACTAAA GCACCAACCA GAGATCATAC
  ATGCGCTGGA CCTAGGCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52685851	NES15521441	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50657395					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52685851	NES15521441	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100894469 () rs orientation: forward

Symbol	Name	Function Class
Cenph	centromere protein H	1713 bp downstream
Rr269996	regulatory region 269996	869 bp distal