rs50657940 SNP Detail

Summary

• ID
  rs50657940
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:27619351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGTGAAG GCAGCTCCTG
  GCACACCTTA AATGAAGGAA ATGGTTCAAA TTCCTCTGCA GAGAAAGTAC AGGAGGAATC
  TATACCTAGG ACTTAGACGC ATGGGCAGAG GTGTAAAATC GCCTCTGCCT ATCCTTGAGG
  CCTTTACAGC ACCAGTTAAG AAGAGCATTC ACAACTGTCT CAAAGAGAAG CAGCAGTGGC
  Y
  GAGTCTACTC TCAACAGCAC AGCTCTGTGT TCTTCAAAGA AATTAAGTTA CTAAAGAACT
  GATGTTGCTT CTATATTAGT ACTATGACTC CAAACAAGTC CTTATCTTTG CAGTCTGTTT
  CCTCATCTCT AAAATTAGAA CACCAATATT TACAGCATTG TCTTATTATA GCAGTTGTCC
  TAACCACTGT CTAAAAGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52540338	NES15611760	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50657940					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52540338	NES15611760	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:27619351 () rs orientation: forward

Symbol	Name	Function Class
Otulin	OTU deubiquitinase with linear linkage specificity	within coordinates
Rr500146	regulatory region 500146	within coordinates
Rr500147	regulatory region 500147	1618 bp proximal
Rr500148	regulatory region 500148	1884 bp proximal
Tssr133864	transcription start site region 133864	2 bp downstream