rs50657945 SNP Detail

Summary

• ID
  rs50657945
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:5642558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATCCTAG ATTAGCAGAC
  AATGGGGAGT TGTAAAAGTA CACTTATTGT ACTAACAGCT AAGACAGAAA ATGTACTAGG
  AGATTCTGGT TTAGACACTA TTGTTTTACT CTTGTTCTGT GAACACATCT CTTATTGGGT
  TTGGAGTATA ATATGATTTT ATATTGAAAA GTAACACCCT CAATGAGATC CTTTAATACC
  R
  TTAAAACCCA GGGTTTTGTT GTTGTTGTTT TGTTTTGTTT TGAGACAGGG TTTCTCTGTG
  TAGCCCTGCT TGTTCTGGAA CTCACTCCAT AGACCAGGCC GGCCTCAAAT TCACAGAGAT
  ACACTTGCCT TTGCCCTGAA ATAAAGGCCT TAAGTGACTT CTTGACCTGT ACTTCATTAT
  CAAGAAATTA CGTGGTTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145954973	ENSMUSSNP4191786	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50657945					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:5642558 () rs orientation: forward

Symbol	Name	Function Class
4930423M02Rik	RIKEN cDNA 4930423M02 gene	274 bp downstream
Cpgi13998	CpG island 13998	1267 bp proximal
Fam110b	family with sequence similarity 110, member B	1451 bp upstream
Tssr36378	transcription start site region 36378	1526 bp upstream
Tssr36379	transcription start site region 36379	1575 bp upstream
Tssr36380	transcription start site region 36380	1658 bp upstream
Tssr36381	transcription start site region 36381	1710 bp upstream