rs50658131 SNP Detail

Summary

• ID
  rs50658131
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:151351696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGGAAAG TTTCACATGA
  AGCAAAACAA AAAAGCTGTT CCTTCACACT CTTTCAGAGT TCAAGAGTTG TGGTCGAGCT
  CTGCTTACCT TACAACTTCA GCTCCAGGGA CATCTCTCAA GTGCAAAGCA GGATGCCAAG
  GTACAGCAGG GTTGATTTTC CCCTCATACA GGTTTCAGCT GTCAGAGCAT CCAGCTCCTC
  T
  GGAAGAACCA GCCCCCTCTT GCCGAACACC AATAAGGAAG CCACACAGCA CATGTGGGCA
  GAGGCTTCCC TGGAAGCCAG TCGCAGTCTG CACACATTCT CTGGGACAGA GGTGCCAAAT
  GAACTTGGCC CATGTCACAC AAAGCGTCCC ATTATGATAT CCTGAGCATC TATTGAGGAG
  GAAAGAGGTT CTGTGAAACT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144728513	ENSMUSSNP4792621	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50658131					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:151351696 () rs orientation: forward

Symbol	Name	Function Class
D730045B01Rik	RIKEN cDNA D730045B01 gene	21 bp upstream
Gm3704	predicted gene 3704	within coordinates
Gm42906	predicted gene 42906	68 bp upstream
Rr117371	regulatory region 117371	1096 bp distal
Rr378823	regulatory region 378823	1286 bp upstream
Tssr54686	transcription start site region 54686	69 bp upstream
Tssr54687	transcription start site region 54687	44 bp upstream