rs50658271 SNP Detail

Summary

• ID
  rs50658271
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62721870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GTTCAGTTCC CAAAGGGCAA CTGGAGCCGG ACACTTCTTT
  CCTGACTCAT TCCTGTGGAT TAATGGGCGA ACACTGGAGG TGAAGGAGAG AGTAAGAGAA
  R
  GGGGAAGTTG CTTTTTCAGA CTGGTCTCAC CATGCAGCCC TAGCTGCCCT GAAACTCACG
  GAGATCTCTA TGCCTTTACC AACCCAGCGC TGGAATAATC A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147126289	ENSMUSSNP539408	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50658271					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62721870 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1638	CpG island 1638	within coordinates
Gm51805	predicted gene, 51805	within coordinates
Rr384811	regulatory region 384811	within coordinates
Tet1	tet methylcytosine dioxygenase 1	within coordinates
Tssr93732	transcription start site region 93732	419 bp downstream
Tssr97890	transcription start site region 97890	1321 bp downstream
Tssr97891	transcription start site region 97891	1370 bp downstream