rs50660690 SNP Detail

Summary

• ID
  rs50660690
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:25379084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTAGAGTC AGGCATGGAG GGGAAGAGAC AGCTCAGTAC
  CTTTGAAATG CTTGGTTTGG GAGTTTGAAT CTCTTCCCAT GCTGGGTAAA GTGGGCTAAA
  R
  GTGGCTGATT ACTTTGCAGG AGGCATCTCT TCCTCGAGTG TTCAAGCTCT TCCGGGCTCT
  GGGCCTGAGG CACCTGGTAG TAGTAGACAA CCACAATCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145379451	ENSMUSSNP3196438	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss325336429	CHEV_17_25297055	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50660690					SNP	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25379084 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Clcn7	chloride channel, voltage-sensitive 7			Intron
				Noncoding-Transcript-Variant
Mir12188	microRNA 12188			393 bp upstream
Tssr143140	transcription start site region 143140			411 bp downstream