rs50660900 SNP Detail

Summary

• ID
  rs50660900
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25952872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGACACAT TCAGTCACAC
  ATAAACACAC AGATAAAAAT TGGAAGCTAT GAAATTACAC CTGGGATAGT GGTATGTATC
  TTTCTAACTT TGGATTGCAT CATTTAATGG AGTAGTTTTA CTTTCTCTTG CAGAAAATCC
  CTAAGGTGTT CTGCAGTGCC ACTGCATGGG GAAGGGGAGA CAGTAAGAAA CCTAAGTTAT
  Y
  CTCTCATATC TGTACTTTGT TTAAAGAATT CCCAAGTTGC ACTGACAATT TTGCCTCATC
  CCTTCATTAT GCAACTGAGT GTCTTTGCAT GGCTGAGGGT TAACAGTACC CTCCCTGGGA
  ATGCTTGTTT CAGCGTGGTG CTGATTCCCC CCACCTGCTG TTACTCCTGC TTCTGCTTCT
  GCTTCTGCTT CTGCTTCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60978865	NES16140117	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50660900					SNP	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60978865	NES16140117	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25952872 () rs orientation: forward

Symbol	Name	Function Class
Rr380532	regulatory region 380532	1226 bp downstream
Vmn1r-ps86	vomeronasal 1 receptor, pseudogene 86	1633 bp upstream