rs50662359 SNP Detail

Summary

• ID
  rs50662359
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38705155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTGAGCT GGGGCTTAGG
  TTAGTCTAGC TAGCCAGGTT GCTCCAAAGT TTTCCATCTT CACCTCCCTC TTGCTTGGAT
  TATAAGTAGG CCCCTATGCC CATTTGGCAT TTATGTGGGT GCTGGGAATC TGAACTCTGT
  CCATTATAGT CACATGCCAA GTGCTTTGCC CTTTAGCCAA CTCCCTGAAG CCAGATTTAG
  Y
  TTCTTGTCAA AGCTCTCCCG GATCTCCAAC TGCCTGGACA TCTAAGAAAC CAGGACTAAA
  ACTTAATCTA GCCTCTAGAG TGTAATGGTT TCCTAGAACT TTCCAGAACA AAGGCTCACA
  GGGGAAGGAG AAACAGTACC AGTGGAAAAA TATAAAGATG TGAGAATATA CTCCCTGAAG
  GTTTCAGCTC CTTATCTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60719304	NES16354816	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50662359					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60719304	NES16354816	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38705155 () rs orientation: forward

Symbol	Name	Function Class
Aff3	AF4/FMR2 family, member 3	1119 bp upstream
Rr366875	regulatory region 366875	919 bp downstream
Rr409725	regulatory region 409725	1130 bp distal
Rr409726	regulatory region 409726	661 bp distal
Rr409727	regulatory region 409727	within coordinates
Rr409728	regulatory region 409728	177 bp proximal
Tssr11346	transcription start site region 11346	1141 bp upstream
Tssr11347	transcription start site region 11347	1129 bp upstream
Tssr11348	transcription start site region 11348	1074 bp upstream
Tssr11349	transcription start site region 11349	1062 bp upstream
Tssr11350	transcription start site region 11350	1040 bp upstream
Tssr11351	transcription start site region 11351	475 bp upstream