rs50664507 SNP Detail

Summary

• ID
  rs50664507
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19117748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTCAGCC TGCAGTCCCA
  GTACTCAAAG TAGAGGCAAC AGGATTGCCA AAAGTTCAAA GCCAGCCAGA GATTCTTAGT
  AACTACTAGG CCTGCATAGC AAGATCCTTT GGGGTAGGCG GGTGAGGAAT AAGAATTAAC
  AATTAAAAGT CCAGCAGAAG AGGAGGAGCG GAGACTATCA GTCCTGGGGC CTTGACAGCG
  W
  TGCCACTGCT GTGTGTGTTG CCTTGCTGTT CCCGGGTGGT GGCATGTCAA GGAGAGTTCC
  CCAGAGCGTA CGTTGATGAC AGAGAGCCTG TGTCTTACTA CTTCTGTGCC CAATTTTCAG
  GGTCATGGAG TCCTGGAGAT GCCCTCGGGC ACTGGGAAGA CAGTGTCCCT ATTGGCCCTG
  ATTGTGGCCT ATCAGCGGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148474318	ENSMUSSNP2570816	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50664507					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19117748 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18481	CpG island 18481	1163 bp distal
Ercc2	excision repair cross-complementing rodent repair deficiency, complementation group 2	within coordinates
Gm26852	predicted gene, 26852	within coordinates
Rr400148	regulatory region 400148	1734 bp downstream
Tssr64844	transcription start site region 64844	1771 bp downstream