rs50664994 SNP Detail

Summary

• ID
  rs50664994
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90788976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAACAGA AAGTACAGGA
  GCATGCTATC ACCAAGTGAG AGTCAGACTG CTTGGTTCAA CTTTGAAGAT GTGAACACAC
  AAGGTTTCAG AGTCACAGAA ATGGTGTGGC AGACTGCACC TGTCCACTTC AACTGTGACC
  AGATGCCTGA GGTGTGAGTG AGTGGTAGTC AGCCTTGCAT GACTGCCTGC CCCTGGGTAG
  R
  ATTGTAAGAC AGGACCACCC AACAATCTAC ATGTTCAGGC TGAGGCTGAC ATAGAGCATT
  TCATAGCCAG TTTCTGGACC CATGTCCCCA TCTCATCCCT ACAGTCTAGG AGAAGCAAAC
  GCCTCCAGGG CTGGTTCCAG AAATTTCCTA TCTAGGACTT TGCCTCATAG ACTGGAAAAT
  TCCAACCTGC AGGCTGATAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60908464	NES15947987	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50664994					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60908464	NES15947987	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90788976 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17728	CpG island 17728	1638 bp distal
Iqsec1	IQ motif and Sec7 domain 1	Intron
Rr634330	regulatory region 634330	1882 bp distal
Rr634331	regulatory region 634331	1381 bp distal
Rr634332	regulatory region 634332	1762 bp distal
Rr634333	regulatory region 634333	227 bp proximal
Tssr62052	transcription start site region 62052	1921 bp upstream
Tssr62053	transcription start site region 62053	1900 bp upstream
Tssr62054	transcription start site region 62054	1834 bp upstream
Tssr62055	transcription start site region 62055	1775 bp upstream