rs50666014 SNP Detail

Summary

• ID
  rs50666014
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153616740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCTTCATA AATCAGAGCT GAGCTCCGAT ACTGGGGGTA
  TTAGCAAATT CGAGTGGGCC AGTAAGCATA ACAAAGAGAG GTAAGTCCTA TTGTCTGTCC
  R
  GCCCTGGGGC TTTAGAGGGG AGAAGGCCTG AAAGGGAAAA TAGGAGCAGA CTAGCTAGGT
  GCCCGAAACC TCTCTCTGGA GATTTGAGTG AGACTTTAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145749146	ENSMUSSNP7098130	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50666014					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153616740 () rs orientation: forward

Symbol	Name	Function Class
Cpgi870	CpG island 870	390 bp distal
Gm28513	predicted gene 28513	within coordinates
Rgs16	regulator of G-protein signaling 16	within coordinates
Rr420742	regulatory region 420742	785 bp distal
Rr420743	regulatory region 420743	635 bp distal
Rr420744	regulatory region 420744	1597 bp proximal
Tssr9477	transcription start site region 9477	634 bp downstream
Tssr9478	transcription start site region 9478	454 bp downstream