rs50668471 SNP Detail

Summary

• ID
  rs50668471
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99883009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATAGATAG ATAGATAGAT
  AGATAGATAG ATAGATAGAT AGATTTCTTG CCAGGAATCG TTGTGCATGC TTTTAACCCC
  AGCATTAAGG AGGCAGAGGG AGGCAGGTGA GTTAAAGGCC TATATAACCT ATATAGGGAG
  TTCCAGGCTA ACTGGGGCTA TGTAGTGGGA CCCGGTCATT GCTCTGTAAA AGTAAAAATA
  R
  ATACTGTTCC CTTAGTGCAA GAACAGATTT TATTAATTTT AACCCATGTG TCACTTAAAA
  TCATTCCTAA CTAGGGATTA ATCCACTCTT ATATGAGTCT TCATTTCCCA GCTAGCCTTG
  ATCTGTACAC GTGCCCCTTT TCTTCCTCTG AGTACAGTAA CTGCGGCTAG GTCCAATACA
  AAACCAAACA AAAACAAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132716365	ENSMUSSNP5169408	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss323830204	CHEV_11_99853497	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50668471					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99883009 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3803	CpG island 3803	1358 bp proximal
Krtap17-1	keratin associated protein 17-1	1051 bp downstream
Tssr110721	transcription start site region 110721	1809 bp downstream