rs50668488 SNP Detail

Summary

• ID
  rs50668488
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96678733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTCCTGG AACTCACTCT
  GTAGAACAGG CTGGTCTTGA ACTCAGAAAT TCTCCTGCCT CTGCCTCCTA AGTGCTAAAG
  TGCTCTTAAA CTCCCAGCAA TCCTCCTGTC TCAATCCCGG GTACTAGGAT TAAGAGGCTT
  GAATCTGGCC TTGGAAAGTT TGATCAGTTC TATTATCAGT TGGACATCTC AGTTATTCAC
  Y
  TAATCACATA TTCAAGGAAT TTTTACCAAT AAATACTGAG AGTCAAAACG TGACCTTGTG
  GCCGGGCGTG GTGGCGCACA ACTTTAATCC CAGCACTCGA GGCAGAGGCA GGCCGATTTC
  TGAGTTTGAG GCCAGCCTGG TCTACAAACT GAGTTTTGAG AGAAACCCTG TCTCAAAAAA
  ACAAACAAAA ACAAACCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132687339	ENSMUSSNP2653735	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss323822796	CHEV_11_96649221	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50668488					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96678733 () rs orientation: forward

Symbol	Name	Function Class
Cbx1	chromobox 1	1220 bp upstream
Cpgi3668	CpG island 3668	933 bp proximal
Rr455508	regulatory region 455508	800 bp proximal
Rr455509	regulatory region 455509	1353 bp proximal
Tssr104569	transcription start site region 104569	1211 bp upstream
Tssr104570	transcription start site region 104570	1242 bp upstream
Tssr104571	transcription start site region 104571	1306 bp upstream
Tssr104572	transcription start site region 104572	1328 bp upstream
Tssr110346	transcription start site region 110346	1081 bp downstream