rs50671173 SNP Detail

Summary

• ID
  rs50671173
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58779822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCA CGAGCTCTTG CTTCCAGGCC
  C
  TCCTGCCCAT GATGGGCTGT ACCCT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146567807	ENSMUSSNP3509620	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325872828	CHEV_19_58865880	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50671173					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58779822 () rs orientation: forward

Symbol	Name	Function Class
Gm17150	predicted gene 17150	815 bp downstream
Gm56672	predicted gene, 56672	within coordinates
Spmip5	sperm microtubule inner protein 5	within coordinates
Tssr159974	transcription start site region 159974	1404 bp downstream
Tssr159975	transcription start site region 159975	1427 bp downstream
Tssr159976	transcription start site region 159976	1878 bp downstream
Tssr159977	transcription start site region 159977	1887 bp downstream
Tssr159978	transcription start site region 159978	1910 bp downstream