rs50673536 SNP Detail

Summary

• ID
  rs50673536
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:145746228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAAGAAGT ATGGACCGGA
  AGGTTTAGGT AACAGAAGGG AAGAAACTCT GGGATGATGG ACATTTCAAA GAGGGGATGA
  ACCTTGATGA AGGAAATTTG GCAAGGAGGA AACTCTGGAG AAGGCTGCAG GAAAATGGAG
  TGTGAAGCAG GGTAGGCCTT TGCTTCAGGT GAAGCCAGGT TTAATTATCG TGTTTAATTG
  R
  TTCAGATCCG ATCTTGTGAG ATTTCGGTTA GGTCCCGCTT GTGTTGAATC CTCTGTGCAT
  TTTAGTACTT GTGGCAGGCG CTCATGTAAT AATAGGCCCT TAAATCTTCA CAAATTCTGT
  CATGTGCTGA TGTCCTCAGT TTCTGGGTGA GGGAAGGGAT TGCACACACA GAACCCTGAC
  GTGGAGTAGG TGGAGACTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147849413	ENSMUSSNP6541412	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320538613	CHEV_2_145730044	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50673536					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145746228 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12364	CpG island 12364	651 bp distal
Gm74898	predicted gene, 74898	1103 bp upstream
Naa20	N(alpha)-acetyltransferase 20, NatB catalytic subunit	within coordinates
Rr39036	regulatory region 39036	1573 bp proximal
Rr55740	regulatory region 55740	within coordinates
Rr397366	regulatory region 397366	975 bp downstream
Tssr20600	transcription start site region 20600	1081 bp downstream
Tssr20601	transcription start site region 20601	1008 bp downstream
Tssr20602	transcription start site region 20602	405 bp downstream