rs50675811 SNP Detail

Summary

• ID
  rs50675811
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60630410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCATTGCC TTATTTTAAG
  TTCTGCTGCT TATGAATCAG AATTATATCT CTAGTCTTAA TTCTCCTCTG TCGTATAGAA
  TGACATACTC AGATCCAGGG TCTCTTTAGA GCTGCATTAT TCTGCATGAT AAAACTAATT
  CTTAGGTAAA GGGAAAGGCT AAGAACCATC TTGTGATTTT TTTTCCAGTT TCTTTCAGAG
  K
  CATGTAGTGT ATAATTTACA GATGGACACC TACAATCCTT GAAATCCCCT TTTAAGTGAT
  TCACAGAATG AAATCGCCCT AGTCAGTGTC GTATGGCTGT GAAGAGATGC CATGTCCAAG
  GAAACTCTTA TCTAGCAAAT TGTTTAATTG GGGATCTGCT TACATTTTCA AGGCTTAGTC
  TATTATCGTG GCAGGGAGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss63529579	NES17015491	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G		T	T		G
ss324986541	CHEV_15_60590116	CHEVERUD	SCREENING_POP	f	SNP					G			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50675811					SNP	G	G	G	G	G	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63529579	NES17015491	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60630410 () rs orientation: forward

Symbol	Name	Function Class
Gm48947	predicted gene, 48947	1670 bp upstream
Rr303268	regulatory region 303268	1191 bp proximal
Rr313850	regulatory region 313850	1192 bp proximal