rs50676917 SNP Detail

Summary

• ID
  rs50676917
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:20781674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G ATAGTTGCAC TGTTTGGAGG AGAAGGAGAA TGGAGGTCCA
  AGGCTTGTAC ATATTTGACC CTAAATAAAG AAGCAGCCAG GACTCTAGGG GGACAGTTTG
  Y
  TGAGCGCCGA CCAACCCTCT GTTCCCAGGG AAGCGCAGGC TAGTGTCGGG GTCCCGGAAG
  CATTCTTCAG CAGGTGCCCG GCCAAGCCGC AACTTGAAGT G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss131781716	ENSMUSSNP2674755	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50676917					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:20781674 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2627	CpG island 2627	within coordinates
Gm12037	predicted gene 12037	within coordinates
Lgalsl	galectin like	618 bp upstream
Rr443483	regulatory region 443483	278 bp distal
Rr443484	regulatory region 443484	within coordinates
Rr443485	regulatory region 443485	258 bp proximal
Tssr3438	transcription start site region 3438	873 bp upstream
Tssr107046	transcription start site region 107046	621 bp upstream
Tssr107047	transcription start site region 107047	600 bp upstream
Tssr107048	transcription start site region 107048	485 bp upstream
Tssr107049	transcription start site region 107049	455 bp upstream
Tssr107050	transcription start site region 107050	409 bp upstream
Tssr107051	transcription start site region 107051	342 bp upstream