rs50677539 SNP Detail

Summary

• ID
  rs50677539
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:145285791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TCTCTCTAAA AACAGAGAAG TCAGAACTGA GTTCCACATC
  TAGAGTAAGT TGCCTCAGTT GCTGTGGGAA TGCTAGAACA ACAGCTGCAG GGCTTTCCCC
  G
  TGTCTCAGAT TCTTCACTCC CTCCAGGTAT CCAATGGTAC CTATGAAAGG GGAAAGGAAA
  TTGTTAAACT CCGTAACCAC ACAAATGTCA CAACAACCTT A                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147865612	ENSMUSSNP6297305	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50677539					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:145285791 () rs orientation: forward

Symbol	Name	Function Class
Gm21978	predicted gene 21978	1408 bp upstream
Rr377362	regulatory region 377362	1724 bp downstream
Rr398684	regulatory region 398684	971 bp downstream