rs50678233 SNP Detail

Summary

• ID
  rs50678233
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:79313668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTACCATA GAGAGAAATT
  AAAATATCAG GATTTGGGGA GGAAACACAT TCTGTGGGAG ACAAAGAAAA TGAGAGGGCT
  GTGAAGTGTT GCTACAATTA AAATGTTAAT TCTAAATCTG TTTTAGCTGC AGAATTCCTC
  TTTTAATTTT TTTTCCTGTG TGATCATATG GTTCGTGTTC TGAACGTGTT AGCTTAGGCA
  R
  CCAGCTTAAA ATATGCTCTG ATTAGTTCTG AATTATTCAG CGCTAATCAG GTACTCCTTC
  AAGTCATCTC TTCTGTGTTG CGGGTCTCCA AAGTCACAAA ATGCTTCTGA ATAAAATAAT
  CCCAAAGTGA AAACGTGAAC TTGACTCTAT CTTCAGTTTA TCAAACAAGA AGTGTGCTTC
  ACGTGTGAAG ACCTGAAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144772761	ENSMUSSNP2723145	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50678233					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79313668 () rs orientation: forward

Symbol	Name	Function Class
Gm70347	predicted gene, 70347	within coordinates
Rr413811	regulatory region 413811	within coordinates
Tssr129	transcription start site region 129	917 bp downstream