rs50680385 SNP Detail

Summary

• ID
  rs50680385
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86348038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATT TTAAAAAACG AGTTACAGTT
  R
  GGTCTTATGG AAGCATTTTC TCAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136756081	ENSMUSSNP2723008	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss323056342	CHEV_9_86359592	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50680385					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86348038 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22101	CpG island 22101	868 bp distal
Cpgi22102	CpG island 22102	932 bp proximal
Dop1a	DOP1 leucine zipper like protein A	1156 bp upstream
Rr684095	regulatory region 684095	1046 bp distal
Rr684096	regulatory region 684096	545 bp distal
Rr684097	regulatory region 684097	1006 bp distal
Rr684098	regulatory region 684098	679 bp proximal
Rr684099	regulatory region 684099	1096 bp proximal
Rr684100	regulatory region 684100	1180 bp proximal
Tssr2956	transcription start site region 2956	1974 bp upstream
Tssr86391	transcription start site region 86391	1178 bp upstream
Tssr86392	transcription start site region 86392	1188 bp upstream
Tssr86393	transcription start site region 86393	1239 bp upstream
Tssr90780	transcription start site region 90780	1042 bp upstream
Tssr90781	transcription start site region 90781	1027 bp upstream
Ube3d	ubiquitin protein ligase E3D	1035 bp upstream