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rs50681778 SNP Detail
Summary
  • ID
    rs50681778
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr7:105291496 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCTCTTGTGG GATTCACATG
    TGTATTCAGG AGGAGTCCTT TCCTGGCAGC TGCCGGTTCT GTGACTTCAT TCCTAGTGTG
    GAGATGGGGA AGGAAGGAGG ATGTGGCATG TACCACCTTG TGGGGCTTCA AGGATGACAG
    CCTGCAGGGC AAGCGACAGC ATGGGGTCTG CATTTATTAC TGTTTTACAG GAGATGGAGC
    W
    CAAGTACTTG TGCTTGCCAG GCAAGAACTT TTTTTTTTTT TTTTTTTTTA ATGTCAGGCT
    ATAAACCATT CTTAGTGCTC AATGGCTTCT GGACACTGAG CATAGAAAGA GCCACTTGCT
    CTTTGCCCCA ATGTCACAGG CAGGGCTGAG CAGCTAGGCC AGGTCTGTGG TGCTGATCTA
    GGACAGCATC TTCAGGGCAG                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss322370128 CHEV_7_112790803 CHEVERUD SCREENING_POP f SNP A T
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs50681778 SNP A T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:105291496 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Arfip2 ARF interacting protein 2 1873 bp upstream
Cpgi19541 CpG island 19541 1068 bp distal
Gm22504 predicted gene, 22504 49 bp downstream
Gm45799 predicted gene 45799 within coordinates
Rr400513 regulatory region 400513 1741 bp downstream
Rr652794 regulatory region 652794 1984 bp distal
Rr652795 regulatory region 652795 1689 bp distal
Timm10b translocase of inner mitochondrial membrane 10B within coordinates
Tssr2358 transcription start site region 2358 1868 bp downstream
Tssr68382 transcription start site region 68382 1775 bp downstream
Tssr68383 transcription start site region 68383 1703 bp downstream
Tssr68384 transcription start site region 68384 1480 bp downstream
Tssr68385 transcription start site region 68385 1262 bp downstream
Tssr68386 transcription start site region 68386 1219 bp downstream
Tssr68387 transcription start site region 68387 48 bp upstream
Tssr68388 transcription start site region 68388 326 bp upstream
Tssr74083 transcription start site region 74083 1919 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory