rs50681812 SNP Detail

Summary

• ID
  rs50681812
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71856508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGGACAA GCATATTGTA
  GTACTCTGCT CTGTGTGCAT TTGGGGTGGT CTACTTCAGC TGACATCTGC AGAGCCTGTG
  GCTGAGGGTG TGTGCATGGC CTGATGGTGC TGTCCTGACC TCAGATACTA AGGCACAATC
  AAGAGATGTT TGGAAGTGGG CTTCTGAAAT TGATATAGCC TTTTATTTTC TTTACTGAGG
  W
  CCAACCTTGT ACGTGCCAGG CAAGTGATCT ACCTGAGCTA CATCTTCATC CCCTAGACAA
  GGCTGTACTT TGATTTTGTA TTGTGGTTTA AATCTGAAGA AACAAAAGAC TGCACGGAAT
  GTGGTCAAAA GACCTCCCTC CCTCCCCATT CACTCACAAA TGCCAGATGT GATTTAAGCC
  TTACCTGGTC TCCAGGTAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146754794	ENSMUSSNP3731199	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50681812					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71856508 () rs orientation: forward

Symbol	Name	Function Class
Rapgef4	Rap guanine nucleotide exchange factor (GEF) 4	within coordinates
Rr54771	regulatory region 54771	1939 bp distal
Rr373343	regulatory region 373343	within coordinates