rs50682212 SNP Detail

Summary

• ID
  rs50682212
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60630165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTTATAT ATATTACAAA
  TATGTAAATA TAATATAATA TAATATAATA TATGTATAGT AAGTATGTGT GTGTGTGTGT
  ATACCTCCAT TCTTTGGCTT GTGGCTCCTT CTCTTATGCT CAAAGCCCAT GATACTGGAC
  CAAGTCCTTA TACTTCCAAT TCTATTGTTC TACCAACCTG TTAGCCTCTT TTCCCATTAA
  K
  GATCAACTTT ATAAGATTGT ATTAGGCCAA CCTGGATAAT CCAGGATCAT TGCCTTATTT
  TAAGTTCTGC TGCTTATGAA TCAGAATTAT ATCTCTAGTC TTAATTCTCC TCTGTCGTAT
  AGAATGACAT ACTCAGATCC AGGGTCTCTT TAGAGCTGCA TTATTCTGCA TGATAAAACT
  AATTCTTAGG TAAAGGGAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147994448	ENSMUSSNP4787223	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss324986536	CHEV_15_60589871	CHEVERUD	SCREENING_POP	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50682212					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60630165 () rs orientation: forward

Symbol	Name	Function Class
Gm48947	predicted gene, 48947	1915 bp upstream
Rr303268	regulatory region 303268	1436 bp proximal
Rr313850	regulatory region 313850	1437 bp proximal