rs50685080 SNP Detail

Summary

• ID
  rs50685080
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171810059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTA ACAGAGGTTG CAGTGGTAGC
  R
  GGGAAGGGAC TGCATTTCTG CTTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120005076	PARCsnp_1.16615	PARC_SEQ	INBRED	f	SNP			A	G
ss120007729	PARCsnp_1.06132	PARC_SEQ	INBRED	f	SNP			A	G
ss146179292	ENSMUSSNP2076963	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320121988	CHEV_1_173912623	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs50685080					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171810059 () rs orientation: forward

Symbol	Name	Function Class
Rr396575	regulatory region 396575	within coordinates
Rr423419	regulatory region 423419	1588 bp distal
Rr423420	regulatory region 423420	within coordinates