rs50685664 SNP Detail

Summary

• ID
  rs50685664
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:31125240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTCGGCG TGGAGTGTTC
  CTGGAGCTGA GTGAAGATGT AGAGGAATAT GAAGACCTCA CAGAAATCAT GTCCAATGTC
  CAGCTCAACA GCAACTTCTT GGCCTTAGCT CGGGAGCTGG ACATCATGGA GCCCAAGGTA
  CCCGATGACA TCTACAAAAC CCACCTAGAG AATAACAGGT TTGGTAGCAG TGGCTCTCAA
  R
  TGGATTCTGC ACGAATGAAC CTAGCCTCCT CTTTTGTGAA TGGCTTTGTG AATGCCGCCT
  TTGGTCAAGA TAAACTACTG ACTGATGATG GCAACAAATG GCTTTACAAA AACAAGGACC
  ATGGGATGTT AAGTGCTGCT GCGTCTCTTG GCATGATTCT GTTGTGGGAT GTGGATGGTG
  GCCTCACCCA GATTGACAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61267503	NES16887496	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50685664					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61267503	NES16887496	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:31125240 () rs orientation: forward

Symbol	Name	Function Class
Gm5422	predicted pseudogene 5422	within coordinates
Gm63653	predicted gene, 63653	within coordinates
Gm67196	predicted gene, 67196	1861 bp downstream