rs50686483 SNP Detail

Summary

• ID
  rs50686483
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126837338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATAGCTTC CAGAATTTCT
  GGGTCAATAT AAAAATTCTT TCTCTCATTA CTTGTTACTA ATGTGTGAAG AGTCCTAACA
  GTAGCAACAA AACTTGTAAG TAAACCCTGG CGAGTGTAAT AAATCGTGTA GGACTAGAAA
  AATGCCTCAG TGGGTAAAGT GCCCATCACC CAAGTGTGAG GACCAGATTT CAATCCCCAA
  W
  GCCCATGTGA GCCAGACATG ATGGTAGCGC GTGTCTGAAA TCCCAGCACT CTTATGAGGA
  GATGGGAAGC AGAGACCAGA GAATCCTTGG AAGCTGCTGG GCCAGTCAGG TGTCGTATAA
  AGCAACTGTC GTATAAAGAC AAAATCCAAA GAGGAAAAGA TGCAATGTCT GGATTCTCTC
  ACGATAGAGC ACATGTGAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147516144	ENSMUSSNP2827427	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320498721	CHEV_2_126821154	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50686483					SNP	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126837338 () rs orientation: forward

Symbol	Name	Function Class
Rr564430	regulatory region 564430	652 bp distal
Rr564431	regulatory region 564431	1251 bp proximal