rs50687016 SNP Detail

Summary

• ID
  rs50687016
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72077290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGAAAGGA CAACTCTCTC
  TTCGCATCTA GCCACGCTCC CTTTGTGCAG CAGCCTGAGA CCTCCAGCCT GCCTGACCCA
  CCCGTCACAT GATGTCTTGC TCTCAAACTC CAATAAAAGT GTCCTCAAGT TTCCTTCTGA
  GTCTGTTTTA AATTATTTTA TTTATGAGAC TAGGGACCTG CACAGGGGAC AGTGTTCTCC
  W
  GTGATAATAG GACACACGCA AGCAAAGATC TGAGGCGAGT CCGCACACTG CTGGCTGACC
  TCCAGGCAGG ATGCAAACAG GAAGTAATAT CTAAGGCGGG GTTGTAAACA GCCGGACTAG
  GCACAGAGGA AGCACCGCAG CACCTAGCTC GACTGCAAGG CCGAAAAGAA ATATTTTATC
  CTCTCTTCCC CCTTCCTGTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61419999	NES16807038	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50687016					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61419999	NES16807038	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72077290 () rs orientation: forward

Symbol	Name	Function Class
Gm69817	predicted gene, 69817	68 bp downstream
Rr197169	regulatory region 197169	890 bp distal
Rr197170	regulatory region 197170	911 bp proximal
Rr197171	regulatory region 197171	1311 bp proximal
Rr383574	regulatory region 383574	within coordinates