rs50687115 SNP Detail

Summary

• ID
  rs50687115
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134947099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTACAGAG AGTTGTGAGC
  TGTGATGTGA GTGCTAGGGA TTAAATCTAT GTCCTCTGAA AGAACAACCA GTGCTCTTAA
  CCGCTGAGCC ATCTCTCCAG CCCCTATGCT AATCATTATT AATAATAATT TATCATCATA
  AGGTATGACC AATGAAAAAA AGACACAGGT ACTAACTAGG AGGTTCCAAA ATGAAAGGAA
  Y
  GAAGTTGTGA AGTTCAGCAC ACCGAGACCA ACCACTGGGG GGCAGCAGCA GAGCAGCAGA
  AAGTCATCTG TCTAGAAGCT AGGAGGGCTG CTTAGCACTC CATCTCTATC TCTAAGAAGC
  TATTCAAAAC ACAAACAAAA AAGCAGTATA GTATACACAG CTGAAAATTA ATTATATTAA
  AATTAAAAAT AATACTTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147541623	ENSMUSSNP3629904	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50687115					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134947099 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Rr86243	regulatory region 86243	1899 bp distal
Rr86244	regulatory region 86244	within coordinates
Rr102925	regulatory region 102925	303 bp proximal
Tssr43965	transcription start site region 43965	1134 bp upstream