rs50688166 SNP Detail

Summary

• ID
  rs50688166
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61762114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACACAGAC TAAGACATCG
  GTCATTGCAG CTTTCTGCTG AAGAGCGTAC ACACGACTCT TTCTACTGTC GATCAGCAGG
  GACTGGCATG GGAGACAAGA TCTGGCACTT GAGTCACCTG GGGTTAGAGC TCTTTCTTGA
  CTTCCCAAGA AGGCCTGGCT CTAGTGTTGT TGGGCAGCAG AAAGGCTCCC AGCATGCTTT
  R
  CACCAGATGC AGGATAGTTT TGTATTAGCT TTTCCTCCTT TCCCCACCCA GCTGTGCAGA
  CTGGCAGAGA GATGGCTGGG GACGAAGCTG CGTTGACTCA CTGCTTGCCT GGCATGCAGA
  AGGCCCTTGG TTTTATCCCC AACATTGCAG GAACTTATCA CGGTGCTCCT AGATCTGTGT
  TCTCAGGACC AAGCGGGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61280632	NES16779760	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50688166					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61280632	NES16779760	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61762114 () rs orientation: forward

Symbol	Name	Function Class
Col13a1	collagen, type XIII, alpha 1	within coordinates
Gm30121	predicted gene, 30121	within coordinates
Rr223137	regulatory region 223137	335 bp distal
Rr384795	regulatory region 384795	1855 bp upstream