rs50688519 SNP Detail

Summary

• ID
  rs50688519
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:96599155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCAGTGAC ATTTTATACA
  TCAAAGAATG TCAGAAATTG CCTGAAAACT ACCAGAAGCC AGAAGAGAAG GTATCAAACA
  AATTCTCCCT TCAGGAAACT TAGAAGAAAC CATCTTTCCA ATATTGTGGT CTTGAGTTGG
  TAGCATCTAA AACTAGCAAT ATATTTCTAT ATAGATACCT TGTTAATGTG GCCCTATCAG
  R
  TAAACACAGT GCCAAAGATT TTTCCAGTTG GGTAGATTTA TTTATTGATT GATTGATTGA
  TTGATTGATT TAGAGAATTA CCAGGAGGAG TCATACCACA GGAAGGGATC ACATCACATC
  ACACAGCTCA CAGTATCAGC CAGTTCAATT ATCCCTCCCT CCCTCCCTCC CTCCCTCCTT
  TCCTCTCTTC CTTCAACTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52166828	NES15316003	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50688519					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52166828	NES15316003	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:96599155 () rs orientation: forward

Symbol	Name	Function Class
Rr221173	regulatory region 221173	846 bp proximal
Tssr95440	transcription start site region 95440	1698 bp upstream