rs50688521 SNP Detail

Summary

• ID
  rs50688521
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16187891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAAT TCGTGCTCTA GATTTTGAAC
  R
  TCTGGGACAG AAGGGTAAAG GAATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148386784	ENSMUSSNP1897231	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss322110714	CHEV_7_17039315	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50688521					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16187891 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18377	CpG island 18377	429 bp distal
Cpgi18378	CpG island 18378	1043 bp proximal
Npas1	neuronal PAS domain protein 1	1752 bp downstream
Rr400123	regulatory region 400123	1048 bp downstream
Rr642666	regulatory region 642666	1546 bp distal
Rr642667	regulatory region 642667	1177 bp distal
Tmem160	transmembrane protein 160	within coordinates
Tssr64613	transcription start site region 64613	998 bp downstream
Tssr64614	transcription start site region 64614	935 bp downstream