rs50688614 SNP Detail

Summary

• ID
  rs50688614
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:17662973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTCAGAC AGGGGGACCT
  GGAGACCTAG GGCTGGGGTG TGTGTGACTA TTGTGGCCCT TGGAGGGCAC TCACAGTTTG
  CTCCAATCAG GGACTCGATG CGCTCCCGGC GCCGCTGGCG TAGCCGGTGG ACCATGAAAA
  GCAGCAGCGA GAGGATGAGG AAGGAGGAGA TACAGCTGAC GACCAGGCGC ATCCCACTAG
  Y
  CATGGAGTCA AACAGGCTGC TGCCATCTAT GAGGAGGGGT GAGGAGGAAG GAAACCAGCG
  GCTCTGAGAA AAGAACTTGC AGGGCTACAG GTGGGGTAGA CAAATGCAGG CAAGCTCTGA
  GTGTTTGGGC TGGTCTGAGC TTCTCCCCTA CACCCAGTGC TTTTACAATG CTCTTGACAA
  CTTTTTCGTA CAGAGGGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147880303	ENSMUSSNP5576577	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50688614					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:17662973 () rs orientation: forward

Symbol	Name	Function Class
Del(16Dgcr2-Hira)1Rak	deletion, Chr 16, Raju Kucherlapati 1	within coordinates
Del(16Dgcr2-Hira)3Aam	deletion, Chr 16, Alea A Mills 3	within coordinates
Dgcr2	DiGeorge syndrome critical region gene 2	within coordinates
Gm20518	predicted gene 20518	within coordinates