rs50688935 SNP Detail

Summary

• ID
  rs50688935
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:149210833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAATATGATT GTAAGGCCTG GGGGTCTTAC ACCCTCAGGT
  GATTCTCATA TAAATTCTAG GTGCAAGGCT GAGCTTTTTT CTCCCCTCAG ACTGTAGAAG
  K
  CACACCTGCC CGGCACTAGG ACCGCGGCCC TGGTGCAAGC GCTCGGGGGC GGAGTGGGGA
  CCCAGCTGGA CCCGCCCCAA CGAAGGCTGC CACCAAACCT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ
ss60961295	NES16169785	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ
rs50688935					SNP	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60961295	NES16169785	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:149210833 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18192	CpG island 18192	within coordinates
Gm56997	predicted gene, 56997	within coordinates
Resf1	retroelement silencing factor 1	79 bp upstream
Rr380294	regulatory region 380294	within coordinates
Rr641718	regulatory region 641718	1092 bp distal
Rr641719	regulatory region 641719	within coordinates
Rr641720	regulatory region 641720	within coordinates
Rr641721	regulatory region 641721	35 bp proximal
Rr641722	regulatory region 641722	150 bp proximal
Rr641723	regulatory region 641723	330 bp proximal
Rr641724	regulatory region 641724	1288 bp proximal
Tssr59650	transcription start site region 59650	17 bp downstream
Tssr59651	transcription start site region 59651	56 bp upstream
Tssr59652	transcription start site region 59652	109 bp upstream
Tssr59653	transcription start site region 59653	210 bp upstream
Tssr59654	transcription start site region 59654	398 bp upstream
Tssr59655	transcription start site region 59655	447 bp upstream
Tssr59656	transcription start site region 59656	993 bp upstream
Tssr64178	transcription start site region 64178	1538 bp upstream
Tssr64179	transcription start site region 64179	298 bp downstream
Tssr64180	transcription start site region 64180	321 bp downstream