rs50689878 SNP Detail

Summary

• ID
  rs50689878
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121710478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGTCTTCTT CTCTCATAGT ATTTGTTTCT TTCTCTTCTT
  TCTGCTTTTT GTTTGTTTGA GACAGGTCTC ACTGTGTAGC CCAGGAGGAC TTTGAGCATA
  Y
  GGCCTCTCAC GTGGTGGAAT TGCTAGAATT CACAACAGGT CTAGCTTACC TCTTGTGCTT
  CTATGCTGTT CATTTATCTA AGACTTGAAT TTTGACTCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320906994	CHEV_3_121619747	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs50689878					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121710478 () rs orientation: forward

Symbol	Name	Function Class
Gm34119	predicted gene, 34119	within coordinates
Rr584204	regulatory region 584204	1266 bp distal
Rr584205	regulatory region 584205	4 bp proximal