rs50690409 SNP Detail

Summary

• ID
  rs50690409
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:67737683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAT TGCTGCCTAC AGTGGGGAAC
  M
  CTGCTCAACA CTACCCCATT GCACA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss136586193	ENSMUSSNP6955518	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss322992773	CHEV_9_67678208	CHEVERUD	SCREENING_POP	f	SNP		C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs50690409					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:67737683 () rs orientation: forward

Symbol	Name	Function Class
C2cd4a	C2 calcium-dependent domain containing 4A	131 bp downstream
Cpgi21983	CpG island 21983	160 bp proximal
Rr196858	regulatory region 196858	1683 bp distal
Rr204692	regulatory region 204692	1803 bp distal
Rr206662	regulatory region 206662	117 bp proximal
Tssr90357	transcription start site region 90357	1924 bp downstream