rs50691563 SNP Detail

Summary

• ID
  rs50691563
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:34552883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGG CTATCCTGAA ACTCACTTTG
  T
  AGACCAGGCT GCCCTTGAAC TCAGA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss146173210	ENSMUSSNP5524736	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs50691563					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:34552883 () rs orientation: forward

Symbol	Name	Function Class
Akirin2	akirin 2	within coordinates
Cpgi14119	CpG island 14119	1176 bp distal
Rr100806	regulatory region 100806	within coordinates
Tssr36768	transcription start site region 36768	1967 bp downstream
Tssr36769	transcription start site region 36769	1954 bp downstream
Tssr36770	transcription start site region 36770	1938 bp downstream
Tssr41190	transcription start site region 41190	1436 bp upstream