TGCAC AGCAAAAGGC TGAGTTGAGC R GACGATACCC AGGCTGTTGA AATTT R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129X1/SvJ |
A/J |
DBA/2J |
LG/J |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|
ss147486050 | ENSMUSSNP2047070 | ENSEMBL | ENSEMBL_Sanger | f | SNP | G | G | G | ||
ss320497837 | CHEV_2_125549819 | CHEVERUD | SCREENING_POP | f | SNP | A | G | |||
SNP Consensus Information | ||||||||||
SNP | Consensus Type | 129X1/SvJ |
A/J |
DBA/2J |
LG/J |
SM/J |
||||
rs50692091 | SNP | G | G | G | A | G |
Location: Chr2:125566003 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi12200 | CpG island 12200 | 449 bp distal | ||||||
D2Dcr70 | DNA Segment, Chr 2, Derry C. Roopenian 70 | 1553 bp proximal | ||||||
D2Mit398 | DNA segment, Chr 2, Massachusetts Institute of Technology 398 | 1511 bp proximal | ||||||
Rr367290 | regulatory region 367290 | 546 bp upstream | ||||||
Rr564270 | regulatory region 564270 | 206 bp distal | ||||||
Rr564271 | regulatory region 564271 | 203 bp distal | ||||||
Rr564272 | regulatory region 564272 | 795 bp proximal | ||||||
Shc4 | SHC (Src homology 2 domain containing) family, member 4 | within coordinates | ||||||
Tssr26008 | transcription start site region 26008 | 546 bp upstream | ||||||
Tssr26009 | transcription start site region 26009 | 392 bp upstream | ||||||
Tssr26010 | transcription start site region 26010 | 360 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
||
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support. |
last database update 12/17/2024 MGI 6.24 |
![]() |
|