rs50692122 SNP Detail

Summary

• ID
  rs50692122
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:104704067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATCACGTA ACAGGAGGGG
  TTGGTAAAGG GAGTTTGGAC TTTAACCTTA GGCAGAGGCC ACACACCTGA TTAAGGCAGT
  ATGCGTTAAC TGGCAGCCTG CCAGGTTCCA CCTCAGAACC ACCTGGGGGA AACCCCAGTT
  CCACTTTGAG TAAACAGGGT GGGACAGGAC ATAGCACAGG CCTAGATAAG GGGAGTATGA
  K
  CGAGAGTTAG GTTACCTTCA AATCTTTGAT GTCATCCAGT CCGCGAAGTT CTCGGTCAAG
  TTTTGTGATG CAGTAACGGA TTTTTTCTAC CTGGAGGGAG GAATAGGTGC CCTTCTCTTA
  GGCCATCCCC CTCACACAAG AGGAAGGCAG AGGCAGGCTG CTGGCCAGGG TGCTGGCGGG
  CAAAGAGGGA AGTCCTAGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60431828	NES15936278	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50692122					SNP	T	T	T	T	T	T	G	T	T	T	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431828	NES15936278	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104704067 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mov10	Mov10 RISC complex RNA helicase			Intron
				Noncoding-Transcript-Variant
Rr582617	regulatory region 582617			1700 bp distal
Tssr31063	transcription start site region 31063			844 bp downstream