rs50692375 SNP Detail

Summary

• ID
  rs50692375
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98944547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCATTTC TCCAGCCCAC
  CCCCCCTTTT TTTTTCTTAA AGAGACAGAG TGTGGCTATC TATGTCCTAG ATAAGTGTAG
  GACAGAGTGA ATTCACCCAG CGAGTGAACA TTCTTTTTTT TTTTTTAAAG ATTTATTTAT
  TGATTATATG TAAGTACACT GTAGCTGTCT TCAGACACTC CAGAAGAGGG AGTCAGATCT
  Y
  CTTACGGATG GTTGTGAGCC ACCATGTGGT TGCTGGGATT TGAACTCCGG ACCTTCGGAA
  GAGCAGTCGG GTGCTCTTAC CCACTGAGCC ATCTCACCAG CCCGTGAGTG AACATTCTAA
  CCCACTGAGC CAGCTGTCCG CTGCTGAGAC CTATCTGAGA AAATCAAGTT TTGGCCTGCT
  GGTTCCAATG CTTTCAGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148463808	ENSMUSSNP4369948	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50692375					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98944547 () rs orientation: forward

Symbol	Name	Function Class
D15Jcs28	DNA segment, Chr 15, John C. Schimenti 28	1158 bp proximal
Gm41399	predicted gene, 41399	within coordinates
Rr311358	regulatory region 311358	423 bp proximal