rs50693245 SNP Detail

Summary

• ID
  rs50693245
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137092578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGG GTATGGAACC CAGAACCTCC
  A
  GCATGCCAGA GCAAGAGTGC TATGG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss144525172	ENSMUSSNP1644979	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50693245					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137092578 () rs orientation: forward

Symbol	Name	Function Class
Rr622785	regulatory region 622785	1328 bp distal
Rr622786	regulatory region 622786	1432 bp distal
Serpine1	serine (or cysteine) peptidase inhibitor, clade E, member 1	within coordinates
Tssr53888	transcription start site region 53888	1794 bp upstream
Tssr53889	transcription start site region 53889	1659 bp upstream
Tssr53890	transcription start site region 53890	1062 bp upstream
Tssr53891	transcription start site region 53891	719 bp upstream
Tssr53892	transcription start site region 53892	642 bp upstream