rs50694675 SNP Detail

Summary

• ID
  rs50694675
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134643853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTGA AGCCACCGGG GCAGTGGAGG
  Y
  GAAGGGCAGG CCACGGTCCA CAGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147538663	ENSMUSSNP5666528	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321349949	CHEV_4_134472457	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50694675					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134643853 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15052	CpG island 15052	1330 bp distal
Rr100259	regulatory region 100259	1052 bp distal
Rr367743	regulatory region 367743	1940 bp upstream
Tmem50a	transmembrane protein 50A	1546 bp upstream
Tssr39578	transcription start site region 39578	1423 bp downstream
Tssr43943	transcription start site region 43943	1569 bp upstream
Tssr43944	transcription start site region 43944	1533 bp upstream
Tssr43945	transcription start site region 43945	1523 bp upstream
Tssr43946	transcription start site region 43946	1824 bp downstream