rs50695455 SNP Detail

Summary

• ID
  rs50695455
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40554166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTAGACC TGCCCTCAGT
  TGCTAACTCT TCTCTTAGAT TTTCACCTTC ACCTCAGGTC AACACTTACC TTGCCCCCAC
  TCTGACATGA ACTTGGGCTC TGCTTTTATT TTATGCTCTT CTCCAGCCTT GTGCTGAAAC
  AATCCCCATG GTTTGCTGTG CCCCGCTGCT TCAGCTTGTC TTTATGGGGA GAATAGGCTC
  M
  GTTTAATTAA GAGGCTTTGG GACTAGTGTG GTCTCACGGT CCTCTAAATT GTTTTAATTA
  CAGTGCAGTT CTTAATTAGG CATTCCACGG TGCACAAGCA TAGCCTCCGA GCCTTTCAAA
  GCTACGGTTA TATCACTCTC CTCATTGATA AATTATTGCT CTGTAAAAGT GATGCTGGAG
  AGAGAGAGTT CATCAGAAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60721438	NES16360427	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50695455					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60721438	NES16360427	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40554166 () rs orientation: forward

Symbol	Name	Function Class
Il18rap	interleukin 18 receptor accessory protein	382 bp upstream
Rr410075	regulatory region 410075	within coordinates
Rr410076	regulatory region 410076	367 bp proximal
Tssr65	transcription start site region 65	489 bp upstream
Tssr6477	transcription start site region 6477	371 bp upstream
Tssr6478	transcription start site region 6478	436 bp upstream
Tssr6479	transcription start site region 6479	465 bp upstream
Tssr11438	transcription start site region 11438	209 bp downstream
Tssr11439	transcription start site region 11439	1441 bp downstream
Tssr11440	transcription start site region 11440	1451 bp downstream
Tssr11441	transcription start site region 11441	1469 bp downstream
Tssr11442	transcription start site region 11442	1485 bp downstream
Tssr11443	transcription start site region 11443	1516 bp downstream