rs50696052 SNP Detail

Summary

• ID
  rs50696052
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:24791040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTG TATGCCCTGT AGGAAAATCT
  R
  TATATATTCA TATATAGTGG TATGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146998850	ENSMUSSNP3650629	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss323275261	CHEV_10_24634948	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50696052					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24791040 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	65 bp downstream
Med23	mediator complex subunit 23	1682 bp downstream
Tssr92746	transcription start site region 92746	478 bp upstream
Tssr92747	transcription start site region 92747	551 bp upstream
Tssr97085	transcription start site region 97085	350 bp downstream
Tssr97086	transcription start site region 97086	396 bp downstream
Tssr97087	transcription start site region 97087	430 bp downstream
Tssr97088	transcription start site region 97088	488 bp downstream
Tssr97089	transcription start site region 97089	507 bp downstream
Tssr97090	transcription start site region 97090	538 bp downstream
Tssr97091	transcription start site region 97091	929 bp downstream
Tssr97092	transcription start site region 97092	949 bp downstream
Tssr97093	transcription start site region 97093	973 bp downstream
Tssr97094	transcription start site region 97094	989 bp downstream
Tssr97095	transcription start site region 97095	1003 bp downstream
Tssr97096	transcription start site region 97096	1268 bp downstream
Tssr97097	transcription start site region 97097	1542 bp downstream
Tssr97098	transcription start site region 97098	1690 bp downstream